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2023
Contribution to book
Open Access
A primer on open science-driven repository platforms
Bardi A., Manghi P., Mannocci A., Ottonello E., Pavone G.
Following Open Science mandates, institutions and communities increasingly demand repositories with native support for publishing scientific literature together with research data, software, and other research products. Such repositories may be thematic or general-purpose and are deeply integrated with the scholarly communication ecosystem to ensure versioning, persistent identifiers, data curation, usage stats, and so on. Identifying the most suitable off-the-shelf repository platform is often a non-trivial task as the choice depends on functional requirements, programming and technical skills, and infrastructure resources. This work analyses four state-of-the-art Open Source repository platforms, namely Dryad, Dataverse, DSpace, and InvenioRDM, from both a functional and a software perspective. This work intends to provide an overview serving as a primer for choosing repository platform solutions in different application scenarios. Moreover, this paper highlights how these platforms reacted to some key Open Science demands, moving away from the original and old-fashioned concept of a repository serving as a static container of files and metadata.Source: Metadata and Semantic Research, edited by Garoufallou E., Vlachidis A., pp. 222–234, 2023
DOI: 10.1007/978-3-031-39141-5_19
Project(s): OpenAIRE Nexus
Metrics:
Bardi A., Manghi P., Mannocci A., Ottonello E., Pavone G.
Following Open Science mandates, institutions and communities increasingly demand repositories with native support for publishing scientific literature together with research data, software, and other research products. Such repositories may be thematic or general-purpose and are deeply integrated with the scholarly communication ecosystem to ensure versioning, persistent identifiers, data curation, usage stats, and so on. Identifying the most suitable off-the-shelf repository platform is often a non-trivial task as the choice depends on functional requirements, programming and technical skills, and infrastructure resources. This work analyses four state-of-the-art Open Source repository platforms, namely Dryad, Dataverse, DSpace, and InvenioRDM, from both a functional and a software perspective. This work intends to provide an overview serving as a primer for choosing repository platform solutions in different application scenarios. Moreover, this paper highlights how these platforms reacted to some key Open Science demands, moving away from the original and old-fashioned concept of a repository serving as a static container of files and metadata.Source: Metadata and Semantic Research, edited by Garoufallou E., Vlachidis A., pp. 222–234, 2023
DOI: 10.1007/978-3-031-39141-5_19
Project(s): OpenAIRE Nexus
Metrics:
See at:
ISTI Repository 
| link.springer.com 
| CNR ExploRA
2023
Conference article
Open Access
(Semi)automated disambiguation of scholarly repositories
Baglioni M., Mannocci A., Pavone G., De Bonis M., Manghi P.
The full exploitation of scholarly repositories is pivotal in modern Open Science, and scholarly repository registries are kingpins in enabling researchers and research infrastructures to list and search for suitable repositories. However, since multiple registries exist, repository managers are keen on registering multiple times the repositories they manage to maximise their traction and visibility across different research communities, disciplines, and applications. These multiple registrations ultimately lead to information fragmentation and redundancy on the one hand and, on the other, force registries' users to juggle multiple registries, profiles and identifiers describing the same repository. Such problems are known to registries, which claim equivalence between repository profiles whenever possible by cross-referencing their identifiers across different registries. However, as we will see, this "claim set" is far from complete and, therefore, many replicas slip under the radar, possibly creating problems downstream. In this work, we combine such claims to create duplicate sets and extend them with the results of an automated clustering algorithm run over repository metadata descriptions. Then we manually validate our results to produce an "as accurate as possible" de-duplicated dataset of scholarly repositories.Source: IRCDL 2023 - 19th conference on Information and Research Science Connecting to Digital and Library Science, pp. 47–59, Bari, Italy, 23-24/02/2023
Project(s): OpenAIRE Nexus
Baglioni M., Mannocci A., Pavone G., De Bonis M., Manghi P.
The full exploitation of scholarly repositories is pivotal in modern Open Science, and scholarly repository registries are kingpins in enabling researchers and research infrastructures to list and search for suitable repositories. However, since multiple registries exist, repository managers are keen on registering multiple times the repositories they manage to maximise their traction and visibility across different research communities, disciplines, and applications. These multiple registrations ultimately lead to information fragmentation and redundancy on the one hand and, on the other, force registries' users to juggle multiple registries, profiles and identifiers describing the same repository. Such problems are known to registries, which claim equivalence between repository profiles whenever possible by cross-referencing their identifiers across different registries. However, as we will see, this "claim set" is far from complete and, therefore, many replicas slip under the radar, possibly creating problems downstream. In this work, we combine such claims to create duplicate sets and extend them with the results of an automated clustering algorithm run over repository metadata descriptions. Then we manually validate our results to produce an "as accurate as possible" de-duplicated dataset of scholarly repositories.Source: IRCDL 2023 - 19th conference on Information and Research Science Connecting to Digital and Library Science, pp. 47–59, Bari, Italy, 23-24/02/2023
Project(s): OpenAIRE Nexus
See at:
ceur-ws.org | ISTI Repository | CNR ExploRA
2023
Contribution to conference
Open Access
OpenAIRE, comunità e servizi per praticare la scienza aperta
Pavone G., Atzori C., Baglioni M., Bardi A., Manghi P., Castelli D.
Per praticare la ricerca secondo i principi dell'Open Science sono al contempo necessarie tecnologie - con infrastrutture che consentano e facilitino la collaborazione e lo scambio massivo di informazioni su scala internazionale - e competenze che permettano di massimizzarne uso e risultati. In altre parole occorrono servizi, scambio di competenze e formazione. Su queste direttrici si concentra il lavoro di OpenAIRE (Open Access Infrastructure for Research in Europe), l'infrastruttura europea per la Scienza Aperta che offre servizi tecnologici e una rete europea di scambio e sinergia per favorire la scienza aperta. Avviata come progetto europeo nel 2009 per il monitoraggio dell'Open Access, nel corso degli anni l'iniziativa è stata rifinanziata e il suo ambito di interesse esteso a tutte le componenti dell'Open Science. Nel 2018 si è costituita come organizzazione senza scopo di lucro per garantire una struttura permanente a supporto delle politiche nazionali ed europee per l'Open Science. Il network di OpenAIRE conta oltre 40 membri tra centri di ricerca, università, fondazioni ed enti gestori di servizi distribuiti in tutta Europa. Come comunità di pratica, OpenAIRE ha la missione di costituire e gestire un'infrastruttura che supporti una comunicazione scientifica aperta e sostenibile, fornendo i servizi, le risorse e il coordinamento di iniziative ed esperti necessari per implementare un ambiente comune europeo per la scienza aperta. Per realizzare questa visione, OpenAIRE offre servizi tecnologici, di training e di supporto, coprendo l'intero ciclo di vita della ricerca (la lista completa dei servizi è consultabile su catalogue.openaire.eu). I servizi tecnologici spaziano dalla gestione dei dati al discovery, dalla gestione di riviste al monitoraggio dei risultati della ricerca e dell'adozione di pratiche Open Science. Inoltre la rete internazionale dei NOAD (National Open Access Desk: openaire.eu/contact-noads) promuove la scienza aperta fornendo assistenza e formazione a vari livelli. L'obiettivo è abilitare i vari attori coinvolti nell'attività scientifica nelle pratiche dell'open science e dell'open access organizzando workshop nazionali e training dedicati. I NOADs inoltre forniscono consulenza esperta sulle infrastrutture che supportano i flussi di lavoro per la scienza aperta, nonché per la definizione di politiche per la sua implementazione, quali stesura e aggiornamento di policies istituzionali, individuazione degli obblighi normativi, di adempimenti relativi ai finanziamenti o di strumenti per il Data Management Plan (DMP). Il CNR, in particolare il suo istituto ISTI, in qualità di centro di sviluppo e innovazione tecnologica dell'infrastruttura e di gestore del NOAD Italiano, opera in accordo con la missione di OpenAIRE contribuendo in modo significativo alle sue attività e agli organismi di governo. L'ente offre dunque le sue competenze per garantire il mantenimento, l'operatività e l'innovazione dell'infrastruttura partecipando in iniziative e progetti che contribuiscono alla sostenibilità e all'innovazione dei servizi di questa infrastruttura. Come NOAD, offre formazione e supporto per affrontare problematiche quali la definizione di DMP, il rispetto dei principi "FAIR" per la gestione dei dati, e la stesura di politiche istituzionali. Le attività sono portate avanti in collaborazione con i NOAD in altri paesi europei in modo da massimizzare l'integrazione di soluzioni e politiche a livello europeo.Source: GenoOA Week 2023, Genoa, Italy, 23-27/10/2023
Pavone G., Atzori C., Baglioni M., Bardi A., Manghi P., Castelli D.
Per praticare la ricerca secondo i principi dell'Open Science sono al contempo necessarie tecnologie - con infrastrutture che consentano e facilitino la collaborazione e lo scambio massivo di informazioni su scala internazionale - e competenze che permettano di massimizzarne uso e risultati. In altre parole occorrono servizi, scambio di competenze e formazione. Su queste direttrici si concentra il lavoro di OpenAIRE (Open Access Infrastructure for Research in Europe), l'infrastruttura europea per la Scienza Aperta che offre servizi tecnologici e una rete europea di scambio e sinergia per favorire la scienza aperta. Avviata come progetto europeo nel 2009 per il monitoraggio dell'Open Access, nel corso degli anni l'iniziativa è stata rifinanziata e il suo ambito di interesse esteso a tutte le componenti dell'Open Science. Nel 2018 si è costituita come organizzazione senza scopo di lucro per garantire una struttura permanente a supporto delle politiche nazionali ed europee per l'Open Science. Il network di OpenAIRE conta oltre 40 membri tra centri di ricerca, università, fondazioni ed enti gestori di servizi distribuiti in tutta Europa. Come comunità di pratica, OpenAIRE ha la missione di costituire e gestire un'infrastruttura che supporti una comunicazione scientifica aperta e sostenibile, fornendo i servizi, le risorse e il coordinamento di iniziative ed esperti necessari per implementare un ambiente comune europeo per la scienza aperta. Per realizzare questa visione, OpenAIRE offre servizi tecnologici, di training e di supporto, coprendo l'intero ciclo di vita della ricerca (la lista completa dei servizi è consultabile su catalogue.openaire.eu). I servizi tecnologici spaziano dalla gestione dei dati al discovery, dalla gestione di riviste al monitoraggio dei risultati della ricerca e dell'adozione di pratiche Open Science. Inoltre la rete internazionale dei NOAD (National Open Access Desk: openaire.eu/contact-noads) promuove la scienza aperta fornendo assistenza e formazione a vari livelli. L'obiettivo è abilitare i vari attori coinvolti nell'attività scientifica nelle pratiche dell'open science e dell'open access organizzando workshop nazionali e training dedicati. I NOADs inoltre forniscono consulenza esperta sulle infrastrutture che supportano i flussi di lavoro per la scienza aperta, nonché per la definizione di politiche per la sua implementazione, quali stesura e aggiornamento di policies istituzionali, individuazione degli obblighi normativi, di adempimenti relativi ai finanziamenti o di strumenti per il Data Management Plan (DMP). Il CNR, in particolare il suo istituto ISTI, in qualità di centro di sviluppo e innovazione tecnologica dell'infrastruttura e di gestore del NOAD Italiano, opera in accordo con la missione di OpenAIRE contribuendo in modo significativo alle sue attività e agli organismi di governo. L'ente offre dunque le sue competenze per garantire il mantenimento, l'operatività e l'innovazione dell'infrastruttura partecipando in iniziative e progetti che contribuiscono alla sostenibilità e all'innovazione dei servizi di questa infrastruttura. Come NOAD, offre formazione e supporto per affrontare problematiche quali la definizione di DMP, il rispetto dei principi "FAIR" per la gestione dei dati, e la stesura di politiche istituzionali. Le attività sono portate avanti in collaborazione con i NOAD in altri paesi europei in modo da massimizzare l'integrazione di soluzioni e politiche a livello europeo.Source: GenoOA Week 2023, Genoa, Italy, 23-27/10/2023
See at:
ISTI Repository | CNR ExploRA
2023
Contribution to conference
Open Access
Etica nella pubblicazione scientifica: Open Access e prevenzione dell'editoria predatoria
Pavone G., Zagarella R. M., Adamo G.
"Se ho potuto vedere lontano, è stando sulle spalle di giganti", scriveva Isaac Newton nel 1675 in una lettera a Robert Hooke. La conoscenza scientifica necessita di scambio, comunicazione e collaborazione. Come condividono gli scienziati i risultati delle loro ricerche nel mondo attuale e con le tecnologie odierne? L'Open Access è un modello di comunicazione scientifica che ha lo scopo di superare ostacoli ereditati dal passato, e che si trova a fronteggiare sfide legate a tecnologie e processi nuovi. Esistono buone prassi consolidate ma anche importanti rischi in termini di etica della ricerca, prodotti da distorsioni del sistema della ricerca. Tra questi rischi, in particolare, vi è il fenomeno della cosiddetta "editoria predatoria" che sfrutta il modello Open Access a scopo di lucro. Questo il tema dell workshop Etica nella pubblicazione scientifica: Open Access e prevenzione dell'editoria predatoria, tenuto giovedì 7 dicembre 2023 a Roma, in occasione dell'evemto di rilevanza nazionale "Più Libri Più Liberi, fiera della piccola e media editoria. Il workshop è stato diviso in due parti, una sull'Open Access e una sull'editoria predatoria, in entrambi i casi seguendo il tema di Più Libri Più Liberi per il 2023: il gioco Nomi Cose Città Animali Fiori Piante.Source: Più Libri Più Liberi - Fiera Nazionale della Piccola e Media Editoria, Roma, Italy, 06-10/12/2023
Pavone G., Zagarella R. M., Adamo G.
"Se ho potuto vedere lontano, è stando sulle spalle di giganti", scriveva Isaac Newton nel 1675 in una lettera a Robert Hooke. La conoscenza scientifica necessita di scambio, comunicazione e collaborazione. Come condividono gli scienziati i risultati delle loro ricerche nel mondo attuale e con le tecnologie odierne? L'Open Access è un modello di comunicazione scientifica che ha lo scopo di superare ostacoli ereditati dal passato, e che si trova a fronteggiare sfide legate a tecnologie e processi nuovi. Esistono buone prassi consolidate ma anche importanti rischi in termini di etica della ricerca, prodotti da distorsioni del sistema della ricerca. Tra questi rischi, in particolare, vi è il fenomeno della cosiddetta "editoria predatoria" che sfrutta il modello Open Access a scopo di lucro. Questo il tema dell workshop Etica nella pubblicazione scientifica: Open Access e prevenzione dell'editoria predatoria, tenuto giovedì 7 dicembre 2023 a Roma, in occasione dell'evemto di rilevanza nazionale "Più Libri Più Liberi, fiera della piccola e media editoria. Il workshop è stato diviso in due parti, una sull'Open Access e una sull'editoria predatoria, in entrambi i casi seguendo il tema di Più Libri Più Liberi per il 2023: il gioco Nomi Cose Città Animali Fiori Piante.Source: Più Libri Più Liberi - Fiera Nazionale della Piccola e Media Editoria, Roma, Italy, 06-10/12/2023
See at:
plpl.it | CNR ExploRA
2023
Other
Open Access
Fulfilling Open Science. Compliance with European Commission mandates and Data Management Plan in CODECS project
Pavone G.
The CODECS project aims to improve the collective capacity to understand, assess and foresee the full range of farm digitalization benefits and costs. To ensure the effectiveness of knowledge transfer to farmers, it is necessary to implement a set of actions to make the project's results accessible and retrievable. The project has established a Data Management Plan (DMP) at M6, which must be regularly updated as required by the funding entity. During the training session, the DMP is presented and the obligations undertaken through the funding are examined. Presentation outline: OS in Horizon Europe. Obligations arising from the funding stream. FAIR data. Types of data in CODECS project and their management. Publications. Things to know and to be aware of about scientific publishing. Various. Other research outputs, costs, legal and ethical issues, gender, and updates.
Pavone G.
The CODECS project aims to improve the collective capacity to understand, assess and foresee the full range of farm digitalization benefits and costs. To ensure the effectiveness of knowledge transfer to farmers, it is necessary to implement a set of actions to make the project's results accessible and retrievable. The project has established a Data Management Plan (DMP) at M6, which must be regularly updated as required by the funding entity. During the training session, the DMP is presented and the obligations undertaken through the funding are examined. Presentation outline: OS in Horizon Europe. Obligations arising from the funding stream. FAIR data. Types of data in CODECS project and their management. Publications. Things to know and to be aware of about scientific publishing. Various. Other research outputs, costs, legal and ethical issues, gender, and updates.
See at:
ISTI Repository | CNR ExploRA
2023
Report
Unknown
InfraScience research activity report 2023
Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bosio C., Bove P., Calanducci A., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., Ibrahim A. S. T., La Bruzzo S., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Molinaro E., Pagano P., Panichi G., Paratore M. T., Pavone G., Piccioli T., Sinibaldi F., Straccia U., Vannini G. L.
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2023 to highlight the major results. In particular, the InfraScience group engaged in research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2023 InfraScience members contributed to the publishing of several papers, to the research and development activities of several research projects (primarily funded by EU), to the organization of conferences and training events, to several working groups and task forces.Source: ISTI Annual Reports, 2023
DOI: 10.32079/isti-ar-2023/002
Project(s): Blue Cloud, EOSC Future , TAILOR
Metrics:
Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bosio C., Bove P., Calanducci A., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., Ibrahim A. S. T., La Bruzzo S., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Molinaro E., Pagano P., Panichi G., Paratore M. T., Pavone G., Piccioli T., Sinibaldi F., Straccia U., Vannini G. L.
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2023 to highlight the major results. In particular, the InfraScience group engaged in research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2023 InfraScience members contributed to the publishing of several papers, to the research and development activities of several research projects (primarily funded by EU), to the organization of conferences and training events, to several working groups and task forces.Source: ISTI Annual Reports, 2023
DOI: 10.32079/isti-ar-2023/002
Project(s): Blue Cloud
, EOSC Future , TAILOR Metrics:
See at: CNR ExploRA
2022
Report
Open Access
Open Science repository platforms
Manghi P., Artini M., La Bruzzo S., Ottonello E., Pavone G.
Institutional and thematic repositories today play a key role in scholarly communication and more broadly in scientific workflows. Many institutions and communities have set the ambitious goal of providing an open access repository for their community of users. However, given the amount of expectations from their users, choosing the right solution is often a non-trivial choice. Some platforms may be served out-of-the-box, to be put in operation after straightforward configurations, but are in general less customizable to adhere to specific functional, non-functional, or contextual needs. Other platforms may be instead extremely customizable and flexible but require skilled personnel for their adaptation and deployment. This report performs an analysis of existing state-of-the-art Open Source repository solutions from the functional, operational, and software perspectives. As a result of the analysis, it will factor out the pros and cons of such solutions and identify typical scenarios of adoption.Source: ISTI Technical Report, ISTI-2022-TR/009, 2022
DOI: 10.32079/isti-tr-2022/009
Project(s): OpenAIRE Nexus
Metrics:
Manghi P., Artini M., La Bruzzo S., Ottonello E., Pavone G.
Institutional and thematic repositories today play a key role in scholarly communication and more broadly in scientific workflows. Many institutions and communities have set the ambitious goal of providing an open access repository for their community of users. However, given the amount of expectations from their users, choosing the right solution is often a non-trivial choice. Some platforms may be served out-of-the-box, to be put in operation after straightforward configurations, but are in general less customizable to adhere to specific functional, non-functional, or contextual needs. Other platforms may be instead extremely customizable and flexible but require skilled personnel for their adaptation and deployment. This report performs an analysis of existing state-of-the-art Open Source repository solutions from the functional, operational, and software perspectives. As a result of the analysis, it will factor out the pros and cons of such solutions and identify typical scenarios of adoption.Source: ISTI Technical Report, ISTI-2022-TR/009, 2022
DOI: 10.32079/isti-tr-2022/009
Project(s): OpenAIRE Nexus
Metrics:
See at:
ISTI Repository | CNR ExploRA
2022
Report
Open Access
Bioschemas data sources aggregation to OpenAIRE Research Graph
Ottonello E., Artini M., La Bruzzo S., Pavone G.
In this report we propose an extended Hadoop-based aggregator for the harvesting of Bioschemas data sources. In this extended hadoop-based aggregator, the downloaded data will be processed according to the consolidated data flow: the original contents will be mapped onto an internal representation that will make them eligible to be integrated in the OpenAIRE research graph.Source: ISTI Technical Report, ISTI-2022-TR/010, 2022
DOI: 10.32079/isti-tr-2022/010
Project(s): EOSC Future, OpenAIRE Nexus
Metrics:
Ottonello E., Artini M., La Bruzzo S., Pavone G.
In this report we propose an extended Hadoop-based aggregator for the harvesting of Bioschemas data sources. In this extended hadoop-based aggregator, the downloaded data will be processed according to the consolidated data flow: the original contents will be mapped onto an internal representation that will make them eligible to be integrated in the OpenAIRE research graph.Source: ISTI Technical Report, ISTI-2022-TR/010, 2022
DOI: 10.32079/isti-tr-2022/010
Project(s): EOSC Future
, OpenAIRE Nexus Metrics:
See at:
ISTI Repository | CNR ExploRA
2022
Other
Open Access
Practical course on FAIR Data Stewardship in Life Science
Pavone G., Lazzeri E., Carta C., Chiara M., Quaglia F.
The course on FAIR Data Stewardship in Life Science organised by ELIXIR Italy, EOSC-Pillar Project, the ICDI Competence Centre, and EOSC-Life, in collaboration with ELIXIR Netherlands. The course is focused on FAIR data management and stewardship. It provides the skills, tools, and standards required to embed Open Science in the research workflow, covering many aspects, such as: Open Science in Horizon Europe, Open Access in publishing, Research Data Management (RDM), FAIR principles, Open Data, and Data Management Plan. The course has been structured in 5 on-line training modules, each one built on frontal lessons and several interactions. This record includes both slides from the lesson modules and additional material (excercises, mentimeter). Instructors/Speakers: Claudio Carta - ELIXIR-IT, Istituto Superiore di Sanità - Roma, Italy Matteo Chiara - ELIXIR-IT, Dept. of Biosciences, University of Milano, Italy Mijke Jetten/Celia van Gelder - ELIXIR-NL, Dutch Techcentre for Life Sciences (DTL), Netherlands Emma Lazzeri - ICDI, GARR, Roma, Italy Gina Pavone - ICDI, National Research Council - ISTI, Pisa, Italy Federica Quaglia - University of Padua, Italy Target audience The course is aimed at Italian life-science researchers, technicians, data stewards, and data managers, especially if they are involved in projects that require planning and writing a Data Management Plan. Course dates: 2-4-7-9-11 March 2022 at 14.30 - 17.30 CET Organizers: Emma Lazzeri - ICDI, GARR, Roma, Italy Loredana Le Pera - ELIXIR-IT, Istituto Superiore di Sanità - FAST, Roma, Italy Ivan Miçetic - ELIXIR-IT, University of Padua, Italy Gina Pavone - ICDI, National Research Council - ISTI, Pisa, Italy Allegra Via - ELIXIR-IT, National Research Council - IBPM, Roma, Italy Reference links: Course page on ELIXIR-IT website: https://elixir-italy.org/event/practical-course-on-fair-data-stewardship-in-life-science/ Course page on EOSC-Pillar website: https://www.eosc-pillar.eu/events/practical-course-fair-data-stewardship-life-science Course page on ICDI website: https://www.icdi.it/it/news/123-corso-pratico-sulla-gestione-dei-dati-fair-nella-scienza-della-vitaProject(s): EOSC-Pillar, ELIXIR-EXCELERATE , EOSC-Life
Pavone G., Lazzeri E., Carta C., Chiara M., Quaglia F.
The course on FAIR Data Stewardship in Life Science organised by ELIXIR Italy, EOSC-Pillar Project, the ICDI Competence Centre, and EOSC-Life, in collaboration with ELIXIR Netherlands. The course is focused on FAIR data management and stewardship. It provides the skills, tools, and standards required to embed Open Science in the research workflow, covering many aspects, such as: Open Science in Horizon Europe, Open Access in publishing, Research Data Management (RDM), FAIR principles, Open Data, and Data Management Plan. The course has been structured in 5 on-line training modules, each one built on frontal lessons and several interactions. This record includes both slides from the lesson modules and additional material (excercises, mentimeter). Instructors/Speakers: Claudio Carta - ELIXIR-IT, Istituto Superiore di Sanità - Roma, Italy Matteo Chiara - ELIXIR-IT, Dept. of Biosciences, University of Milano, Italy Mijke Jetten/Celia van Gelder - ELIXIR-NL, Dutch Techcentre for Life Sciences (DTL), Netherlands Emma Lazzeri - ICDI, GARR, Roma, Italy Gina Pavone - ICDI, National Research Council - ISTI, Pisa, Italy Federica Quaglia - University of Padua, Italy Target audience The course is aimed at Italian life-science researchers, technicians, data stewards, and data managers, especially if they are involved in projects that require planning and writing a Data Management Plan. Course dates: 2-4-7-9-11 March 2022 at 14.30 - 17.30 CET Organizers: Emma Lazzeri - ICDI, GARR, Roma, Italy Loredana Le Pera - ELIXIR-IT, Istituto Superiore di Sanità - FAST, Roma, Italy Ivan Miçetic - ELIXIR-IT, University of Padua, Italy Gina Pavone - ICDI, National Research Council - ISTI, Pisa, Italy Allegra Via - ELIXIR-IT, National Research Council - IBPM, Roma, Italy Reference links: Course page on ELIXIR-IT website: https://elixir-italy.org/event/practical-course-on-fair-data-stewardship-in-life-science/ Course page on EOSC-Pillar website: https://www.eosc-pillar.eu/events/practical-course-fair-data-stewardship-life-science Course page on ICDI website: https://www.icdi.it/it/news/123-corso-pratico-sulla-gestione-dei-dati-fair-nella-scienza-della-vitaProject(s): EOSC-Pillar
, ELIXIR-EXCELERATE , EOSC-Life
See at:
ISTI Repository | ISTI Repository | ISTI Repository | ISTI Repository | ISTI Repository | CNR ExploRA | zenodo.org
2022
Other
Open Access
Open Science in research projects
Pavone G., Lazzeri E.
Series of three seminars on Open Science in research projects held at the University of Siena. Day 1: Open Science and research assessment Day 2: Research Data Management Day 3: Horizon Europe, Eosc and Research Infrastructures Presentations are in English while the course outline with the detailed description of modules and interactions is in Italian.Project(s): EOSC-Pillar, OpenAIRE-Advance
Pavone G., Lazzeri E.
Series of three seminars on Open Science in research projects held at the University of Siena. Day 1: Open Science and research assessment Day 2: Research Data Management Day 3: Horizon Europe, Eosc and Research Infrastructures Presentations are in English while the course outline with the detailed description of modules and interactions is in Italian.Project(s): EOSC-Pillar
, OpenAIRE-Advance
See at:
ISTI Repository | ISTI Repository | CNR ExploRA | zenodo.org
2022
Contribution to conference
Open Access
Research Data Management basics: why it is essential to take care of data
Pavone G., Lazzeri E.
Properly managing research data is useful for oneself and it is fundamental to create an ecosystem where data can be valued by multiple actors and perspectives. The presentation was given as an introductory and motivational training webinar in which Research Data Management was framed as one of the practices of Open Science. In addition, the steps to be taken to start a proper strategy to design a shared workflow of research data management within CISUP were discussed. CISUP is the Center for Instrument Sharing of the University of Pisa, an interdepartmental laboratory platform offering access to a wide range of analytical instrumentation for life and physical science researchers: https://cisup.unipi.it/Source: Webinar in collaborazione con CISUP, online, 20/01/2022
DOI: 10.5281/zenodo.5887497
Project(s): EOSC-Pillar, OpenAIRE-Advance
Metrics:
Pavone G., Lazzeri E.
Properly managing research data is useful for oneself and it is fundamental to create an ecosystem where data can be valued by multiple actors and perspectives. The presentation was given as an introductory and motivational training webinar in which Research Data Management was framed as one of the practices of Open Science. In addition, the steps to be taken to start a proper strategy to design a shared workflow of research data management within CISUP were discussed. CISUP is the Center for Instrument Sharing of the University of Pisa, an interdepartmental laboratory platform offering access to a wide range of analytical instrumentation for life and physical science researchers: https://cisup.unipi.it/Source: Webinar in collaborazione con CISUP, online, 20/01/2022
DOI: 10.5281/zenodo.5887497
Project(s): EOSC-Pillar
, OpenAIRE-Advance Metrics:
See at:
ZENODO | ISTI Repository | ISTI Repository | zenodo.org | CNR ExploRA
2022
Other
Open Access
FAIR principles and Data Management Plan
Pavone G.
Three modules of the Open Science course for PhD students, University of Pisa, year 2022. Agenda of the 3 lectures: What FAIR principles are and their value for research Why do we need "fairness", some examples and hands-on session Data Management Plan: what it is, how to do it, some examples and hands-on sessionProject(s): EOSC-Pillar
Pavone G.
Three modules of the Open Science course for PhD students, University of Pisa, year 2022. Agenda of the 3 lectures: What FAIR principles are and their value for research Why do we need "fairness", some examples and hands-on session Data Management Plan: what it is, how to do it, some examples and hands-on sessionProject(s): EOSC-Pillar
See at:
ISTI Repository | ISTI Repository | ISTI Repository | ISTI Repository | CNR ExploRA | zenodo.org
2022
Other
Open Access
Take care of data! How Data Management and Open Science practices can improve your everyday life
Pavone G.
Presentation on Research Data Management for undergraduate students in the course Database 2 of the master degree in Computer Engineering, University of Padua, 2 December 2021.Project(s): EXA MODE, OpenAIRE-Advance
Pavone G.
Presentation on Research Data Management for undergraduate students in the course Database 2 of the master degree in Computer Engineering, University of Padua, 2 December 2021.Project(s): EXA MODE
, OpenAIRE-Advance
See at:
ISTI Repository | CNR ExploRA | zenodo.org
2022
Report
Open Access
InfraScience research activity report 2021
Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bove P., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., La Bruzzo S., Lazzeri E., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Ottonello E., Pagano P., Panichi G., Pavone G., Piccioli T., Sinibaldi F., Straccia U.
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2021 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, eScience, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2021 InfraScience members contributed to the publishing of 25 papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.Source: ISTI Annual report, 2022
DOI: 10.32079/isti-ar-2022/001
Project(s): ARIADNEplus, Blue Cloud , PerformFISH , EOSC-Pillar , DESIRA , EOSC Future , EOSCsecretariat.eu , EcoScope , RISIS 2 , OpenAIRE-Advance , OpenAIRE Nexus , SoBigData-PlusPlus
Metrics:
Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bove P., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., La Bruzzo S., Lazzeri E., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Ottonello E., Pagano P., Panichi G., Pavone G., Piccioli T., Sinibaldi F., Straccia U.
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2021 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, eScience, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2021 InfraScience members contributed to the publishing of 25 papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.Source: ISTI Annual report, 2022
DOI: 10.32079/isti-ar-2022/001
Project(s): ARIADNEplus
, Blue Cloud , PerformFISH , EOSC-Pillar , DESIRA , EOSC Future , EOSCsecretariat.eu , EcoScope , RISIS 2 , OpenAIRE-Advance , OpenAIRE Nexus , SoBigData-PlusPlus Metrics:
See at:
ISTI Repository | CNR ExploRA
2022
Report
Open Access
Data model description of the OpenAIRE Research Graph
La Bruzzo S. F., Artini M., Atzori C., Bardi A., Baglioni M., De Bonis M., Mannocci A., Manghi P., Pavone G.
The OpenAIRE Graph (formerly known as the OpenAIRE Research Graph) is one of the largest open scholarly record collections worldwide, key to fostering Open Science and establishing its practices in daily research activities. Conceived as a public and transparent good, populated out of data sources trusted by scientists, the Graph aims at bringing discovery, monitoring, and assessment of science back into the hands of the scientific community. Imagine a vast collection of research products all linked together, contextualized, and openly available. For the past years, OpenAIRE has been working to gather this valuable record. It is a massive collection of metadata and links between scientific products such as articles, datasets, software, and other research products, entities like organizations, funders, funding streams, projects, communities, and data sources. This technical Report describes the public data model adopted by the OpenAIRE Graph.Source: ISTI Technical Report, ISTI-2022-TR/031, 2022
DOI: 10.32079/isti-tr-2022/031
Metrics:
La Bruzzo S. F., Artini M., Atzori C., Bardi A., Baglioni M., De Bonis M., Mannocci A., Manghi P., Pavone G.
The OpenAIRE Graph (formerly known as the OpenAIRE Research Graph) is one of the largest open scholarly record collections worldwide, key to fostering Open Science and establishing its practices in daily research activities. Conceived as a public and transparent good, populated out of data sources trusted by scientists, the Graph aims at bringing discovery, monitoring, and assessment of science back into the hands of the scientific community. Imagine a vast collection of research products all linked together, contextualized, and openly available. For the past years, OpenAIRE has been working to gather this valuable record. It is a massive collection of metadata and links between scientific products such as articles, datasets, software, and other research products, entities like organizations, funders, funding streams, projects, communities, and data sources. This technical Report describes the public data model adopted by the OpenAIRE Graph.Source: ISTI Technical Report, ISTI-2022-TR/031, 2022
DOI: 10.32079/isti-tr-2022/031
Metrics:
See at:
ISTI Repository | CNR ExploRA
2022
Report
Open Access
OpenAIRE Research Graph: aggregation workflow
La Bruzzo S. F., Artini M., Atzori C., Bardi A., Baglioni M., De Bonis M., Dell'Amico A., Mannocci A., Manghi P., Pavone G.
The OpenAIRE Graph (formerly the OpenAIRE Research Graph) is one of the largest open scholarly record collections worldwide. It is key in fostering Open Science and establishing its practices in daily research activities. Conceived as a public and transparent good, populated out of data sources trusted by scientists, the Graph aims at bringing discovery, monitoring, and assessment of science back into the hands of the scientific community. OpenAIRE collects metadata records from more than 70K scholarly communication sources worldwide, including Open Access institutional repositories, data archives, and journals. All the metadata records (i.e., descriptions of research products) are put together in a data lake with records from Crossref, Unpaywall, ORCID, ROR, and information about projects provided by national and international funders. This technical Report describes the main Aggregation Workflow to orchestrate the data aggregation and the implemented mapping from some of the main datasources into the OpenAIRE research graph data model.Source: ISTI Technical Report, ISTI-2022-TR/033, 2022
DOI: 10.32079/isti-tr-2022/033
Project(s): OpenAIRE-Advance, OpenAIRE Nexus
Metrics:
La Bruzzo S. F., Artini M., Atzori C., Bardi A., Baglioni M., De Bonis M., Dell'Amico A., Mannocci A., Manghi P., Pavone G.
The OpenAIRE Graph (formerly the OpenAIRE Research Graph) is one of the largest open scholarly record collections worldwide. It is key in fostering Open Science and establishing its practices in daily research activities. Conceived as a public and transparent good, populated out of data sources trusted by scientists, the Graph aims at bringing discovery, monitoring, and assessment of science back into the hands of the scientific community. OpenAIRE collects metadata records from more than 70K scholarly communication sources worldwide, including Open Access institutional repositories, data archives, and journals. All the metadata records (i.e., descriptions of research products) are put together in a data lake with records from Crossref, Unpaywall, ORCID, ROR, and information about projects provided by national and international funders. This technical Report describes the main Aggregation Workflow to orchestrate the data aggregation and the implemented mapping from some of the main datasources into the OpenAIRE research graph data model.Source: ISTI Technical Report, ISTI-2022-TR/033, 2022
DOI: 10.32079/isti-tr-2022/033
Project(s): OpenAIRE-Advance
, OpenAIRE Nexus Metrics:
See at:
ISTI Repository | CNR ExploRA
2022
Report
Open Access
OpenAIRE Research Graph deduplication workflow
La Bruzzo S. F., Artini M., Atzori C., Bardi A., Baglioni M., De Bonis M., Mannocci A., Manghi P., Pavone G.
The OpenAIRE aggregation workflow can collect metadata records from different providers about the same scholarly work. Each metadata record can carry different information because, for example, some providers are not aware of links to projects, keywords, or other details. Another typical case is when OpenAIRE collects one metadata record from a repository about a pre-print and another from a journal about the published article. To provide correct statistics, OpenAIRE must identify those cases and "merge" the two metadata records so that the scholarly work is counted only once in the statistics OpenAIRE produces. This technical Report describes the Deduplication workflow and technique adopted to deduplicate the OpenAIRE Graph.Source: ISTI Technical Report, ISTI-2022-TR/032, 2022
DOI: 10.32079/isti-tr-2022/032
Project(s): OpenAIRE-Connect, OpenAIRE Nexus
Metrics:
La Bruzzo S. F., Artini M., Atzori C., Bardi A., Baglioni M., De Bonis M., Mannocci A., Manghi P., Pavone G.
The OpenAIRE aggregation workflow can collect metadata records from different providers about the same scholarly work. Each metadata record can carry different information because, for example, some providers are not aware of links to projects, keywords, or other details. Another typical case is when OpenAIRE collects one metadata record from a repository about a pre-print and another from a journal about the published article. To provide correct statistics, OpenAIRE must identify those cases and "merge" the two metadata records so that the scholarly work is counted only once in the statistics OpenAIRE produces. This technical Report describes the Deduplication workflow and technique adopted to deduplicate the OpenAIRE Graph.Source: ISTI Technical Report, ISTI-2022-TR/032, 2022
DOI: 10.32079/isti-tr-2022/032
Project(s): OpenAIRE-Connect
, OpenAIRE Nexus Metrics:
See at:
ISTI Repository | CNR ExploRA
2022
Report
Open Access
OpenOrgs: a tool for the disambiguation of organizations
Artini M., La Bruzzo S. F., De Bonis M., Pavone G.
Organizations appear all over the Research & Innovation ecosystem in different shapes and formats: the same organization may appear with different metadata fields, different names - e.g., full legal name, short or alternative names, acronym. The ambiguity of organizations results in a huge deficiency in the exchange of information, the findability of research products, the monitoring of activities, and ultimately building a linked open scholarly communication system. OpenOrgs combines an automated process and human curation to compensate for the lack of information available and improve the organization's discoverability.Source: ISTI Technical Report, ISTI-2022-TR/034, 2022
DOI: 10.32079/isti-tr-2022/034
Project(s): OpenAIRE-Advance, OpenAIRE Nexus
Metrics:
Artini M., La Bruzzo S. F., De Bonis M., Pavone G.
Organizations appear all over the Research & Innovation ecosystem in different shapes and formats: the same organization may appear with different metadata fields, different names - e.g., full legal name, short or alternative names, acronym. The ambiguity of organizations results in a huge deficiency in the exchange of information, the findability of research products, the monitoring of activities, and ultimately building a linked open scholarly communication system. OpenOrgs combines an automated process and human curation to compensate for the lack of information available and improve the organization's discoverability.Source: ISTI Technical Report, ISTI-2022-TR/034, 2022
DOI: 10.32079/isti-tr-2022/034
Project(s): OpenAIRE-Advance
, OpenAIRE Nexus Metrics:
See at:
ISTI Repository | CNR ExploRA
2022
Report
Open Access
InfraScience research activity report 2022
Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bove P., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., La Bruzzo S., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Ottonello E., Pagano P., Panichi G., Pavone G., Piccioli T., Sinibaldi F., Straccia U., Zoppi F.
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2022 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2022 InfraScience members contributed to the publishing of several papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.Source: ISTI Annual reports, 2022
DOI: 10.32079/isti-ar-2022/004
Project(s): ARIADNEplus, Blue Cloud , EOSC-Pillar , DESIRA , EOSC Future , RISIS 2 , TAILOR , SoBigData-PlusPlus
Metrics:
Artini M., Assante M., Atzori C., Baglioni M., Bardi A., Bove P., Candela L., Casini G., Castelli D., Cirillo R., Coro G., De Bonis M., Debole F., Dell'Amico A., Frosini L., La Bruzzo S., Lelii L., Manghi P., Mangiacrapa F., Mangione D., Mannocci A., Ottonello E., Pagano P., Panichi G., Pavone G., Piccioli T., Sinibaldi F., Straccia U., Zoppi F.
InfraScience is a research group of the National Research Council of Italy - Institute of Information Science and Technologies (CNR - ISTI) based in Pisa, Italy. This report documents the research activity performed by this group in 2022 to highlight the major results. In particular, the InfraScience group confronted with research challenges characterising Data Infrastructures, e-Science, and Intelligent Systems. The group activity is pursued by closely connecting research and development and by promoting and supporting open science. In fact, the group is leading the development of two large scale infrastructures for Open Science, i.e. D4Science and OpenAIRE. During 2022 InfraScience members contributed to the publishing of several papers, to the research and development activities of 18 research projects (15 funded by EU), to the organization of conferences and training events, to several working groups and task forces.Source: ISTI Annual reports, 2022
DOI: 10.32079/isti-ar-2022/004
Project(s): ARIADNEplus
, Blue Cloud , EOSC-Pillar , DESIRA , EOSC Future , RISIS 2 , TAILOR , SoBigData-PlusPlus Metrics:
See at:
ISTI Repository | CNR ExploRA
2021
Report
Open Access
Progettare un evento divulgativo online. L'esperienza di "Fai una domanda su Covid-19, gli esperti rispondono"
Pavone G., Lazzeri E., Circella M., De Leo F.
Il documento raccoglie le domande ricevute e le risposte date in occasione del webinar "Fai una domanda su Covid-19, gli esperti rispondono", realizzato il 27 novembre 2020. Inoltre il report descrive gli aspetti principali dell'organizzazione di un webinar "Ask Me Anything", che voleva essere un evento informativo, online e rivolto ai giovani sul tema pandemia di Covid-19. A distanza di diversi mesi dall'inizio della pandemia, erano ancora tanti i dubbi e le incertezze diffuse tra le persone, anche riguardo ad aspetti noti e chiariti in sede di ricerca scientifica. In occasione dell'edizione 2020 della Notte Europea dei Ricercatori e delle Ricercatrici, e? stato fatto uno sforzo divulgativo di apertura e confronto con alcuni esperti impegnati nella ricerca su Sars-Cov-2 e Covid- 19.Source: ISTI Technical Report, ISTI-2021-TR/002, 2021
DOI: 10.32079/isti-tr-2021/002
Project(s): ELIXIR-EXCELERATE, ERN-Apulia , OpenAIRE-Advance
Metrics:
Pavone G., Lazzeri E., Circella M., De Leo F.
Il documento raccoglie le domande ricevute e le risposte date in occasione del webinar "Fai una domanda su Covid-19, gli esperti rispondono", realizzato il 27 novembre 2020. Inoltre il report descrive gli aspetti principali dell'organizzazione di un webinar "Ask Me Anything", che voleva essere un evento informativo, online e rivolto ai giovani sul tema pandemia di Covid-19. A distanza di diversi mesi dall'inizio della pandemia, erano ancora tanti i dubbi e le incertezze diffuse tra le persone, anche riguardo ad aspetti noti e chiariti in sede di ricerca scientifica. In occasione dell'edizione 2020 della Notte Europea dei Ricercatori e delle Ricercatrici, e? stato fatto uno sforzo divulgativo di apertura e confronto con alcuni esperti impegnati nella ricerca su Sars-Cov-2 e Covid- 19.Source: ISTI Technical Report, ISTI-2021-TR/002, 2021
DOI: 10.32079/isti-tr-2021/002
Project(s): ELIXIR-EXCELERATE
, ERN-Apulia , OpenAIRE-Advance Metrics:
See at:
ISTI Repository | CNR ExploRA